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HDF5: H5D - Hierarchical Data Format

https://docs.hdfgroup.org/hdf5/v1_12/group___h5_d.html

H5Dopen2() opens the existing dataset specified by a location identifier and name, loc_id and name, respectively. loc_id may specify a file, group, dataset, named datatype, or attribute. If an …


c - Why does such a simple HDF5 example for file …

https://stackoverflow.com/questions/65237343/why-does-such-a-simple-hdf5-example-for-file-opening-fail

Connect and share knowledge within a single location that is structured and easy to search. ... (1.10.6) thread 0: #000: H5D.c line 288 in H5Dopen2(): not a location major: Invalid arguments …


hdf5 unit test failures · GitHub - Gist

https://gist.github.com/rwcarlsen/3c35df49b8db6a7de0b5

#000: H5A.c line 247 in H5Acreate2(): not a location: major: Invalid arguments to routine: minor: Inappropriate type ... #000: H5D.c line 358 in H5Dopen2(): not found: major: Dataset: minor: …


HDF5 error · Issue #14 · geodynamics/vq · GitHub

https://github.com/geodynamics/vq/issues/14

000: H5D.c line 316 in H5Dopen2(): not a location major: Invalid arguments to routine minor: Inappropriate type 001: H5Gloc.c line 253 in H5G_loc(): invalid object ID ... #000: …


HDF5 issue · Issue #75 · jts/nanopolish · GitHub

https://github.com/jts/nanopolish/issues/75

#000: H5D.c line 358 in H5Dopen2(): not found major: Dataset minor: Object not found #1: H5Gloc.c line 430 in H5G_loc_find(): can't find object major: Symbol table minor: …


problem with restarting a job - User Support - OpenMC

https://openmc.discourse.group/t/problem-with-restarting-a-job/189

#000: H5D.c line 358 in H5Dopen2(): not found major: Dataset minor: Object not found #001: H5Gloc.c line 430 in H5G_loc_find(): can’t find object major: Symbol table minor: …


Convert ACE ENDF format - User Support - OpenMC

https://openmc.discourse.group/t/convert-ace-endf-format/2144

#000: H5D.c line 285 in H5Dopen2(): unable to open dataset major: Dataset minor: Can’t open object #001: H5VLcallback.c line 1910 in H5VL_dataset_open(): dataset open failed …


OpenMC not finding multipole library - User Support - OpenMC

https://openmc.discourse.group/t/openmc-not-finding-multipole-library/509

The library file also exists at the specified location and as far as I can tell should be fine. Any idea what I’m missing? IIn case it helps, I am running on a CentOS 7.6.1810, with …


unit/regression test failures on osx 10.9.3 with hdf5 1.8.13

https://groups.google.com/g/cyclus-dev/c/7zZHaY7BaxE

#000: H5D.c line 358 in H5Dopen2(): not found major: Dataset minor: Object not found #001: H5Gloc.c line 430 in H5G_loc_find(): can't find object major: Symbol table minor: …


Error when selecting and writing an element dataset hdf5 1.10.4 …

https://forum.hdfgroup.org/t/error-when-selecting-and-writing-an-element-dataset-hdf5-1-10-4-solved/9330

I solved the problem. Apparently, I have to define also a memory data space and pass the relative arguments to the h5dwrite_f interface. It is not clear to me why these optional …


Error about HDF5 · Issue #10 · norouzi/mih · GitHub

https://github.com/norouzi/mih/issues/10

The text was updated successfully, but these errors were encountered:


HDF5: Datasets (H5D) - Hierarchical Data Format

https://docs.hdfgroup.org/hdf5/develop/group___h5_d.html

H5Dopen2() opens the existing dataset specified by a location identifier and name, loc_id and name, respectively. loc_id may specify a file, group, dataset, named datatype, or attribute. If an …


Reading HDF5 input

https://groups.google.com/g/caffe-users/c/qCU71Lv65ak

I am having some trouble loading HDF5 data into my caffe model. I have a text file which has the full path for the data file (hdf5) and label file (hdf5) in seperate lines. ... #000: …


HDF5-DIAG: Error detected in HDF5 · Issue #63 - GitHub

https://github.com/esowc/ml_drought/issues/63

The text was updated successfully, but these errors were encountered:


HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:

https://forum.hdfgroup.org/t/hdf5-diag-error-detected-in-hdf5-1-10-4-thread-0/5473

Hi Greetings, I am trying to execute code using H5Dread function,mem id used is H5T_Compound type at runtime I am getting following error, #000: c:\\autotest\\hdf5110 …


Question #216582 : Questions : DOLFIN - Launchpad

https://answers.launchpad.net/dolfin/+question/216582

All other unit tests seem to pass. The test in question creates a Vector(305), is that a proper test in parallell? Is there something wrong with my setup? Errors like these occur on …


[Bug] HDF5-DIAG: Error detected in HDF5 (1.10.5) #1427 - GitHub

https://github.com/GEOSX/GEOSX/issues/1427

Machine: Ubuntu. Compiler: gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0. GEOSX Version:0.2.0. Move the input file to one of the Lustre filesystems, such as /p/lscratchh/XXX/. …


eclipse - hdf5 example code h5_rdwt.c does not work - Stack …

https://stackoverflow.com/questions/22511565/hdf5-example-code-h5-rdwt-c-does-not-work

Connect and share knowledge within a single location that is structured and easy to search. Learn more about Teams hdf5 example code h5_rdwt.c does not work ... (1.8.11) …


Matlab h5read get errors - MATLAB Answers - MATLAB Central

https://www.mathworks.com/matlabcentral/answers/158986-matlab-h5read-get-errors

Matlab h5read get errors . Learn more about h5read, matlab 2013b, function errors, hdf5


HDF5-DIAG: Error detected in HDF5 - HDF5 - HDF Forum

https://forum.hdfgroup.org/t/hdf5-diag-error-detected-in-hdf5/9517

I solved the issue by adding --hdf5 …/HDF5. In this way, the system points to the right file which has a different version. Thanks, Lovepreet


HDF5 I/O crashing - FEniCS Q&A

https://fenicsproject.org/qa/2619/hdf5-i-o-crashing/

The following code compiles fine but crashes when run. First, I run it without commenting the "OUTPUT" so as to generate the h5 output file; this works fine but it crashes when I try to read …


Simulation end after 20% / Bug Reports / User Forum of Software …

https://forum.basement.ethz.ch/viewtopic.php?id=5295

To recover data from a corrupted .h5 file is probably possible, e.g. with a python script. But first I would create a copy of the simulation, delete the results.h5 file and restart the …


Error in write data - HDF5 - HDF Forum

https://forum.hdfgroup.org/t/error-in-write-data/7017

#000: H5Dio.c line 336 in H5Dwrite(): can’t write data major: Dataset minor: Write failed #001: H5Dio.c line 820 in H5D__write(): can’t write data major: Dataset minor: Write …


Hec Ras - HDF5-DIAG: Error detected in HDF5 - Autodesk Community

https://forums.autodesk.com/t5/civil-3d-forum/river-and-flood-hec-ras-hdf5-diag-error-detected-in-hdf5/td-p/9574602

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Error importing molecule_info.h5 file generated by Cell Ranger …

https://support.bioconductor.org/p/119686/

Hello! I am going though the vignette for DropletUtils and I am having an issue importing the the molecule info.h5 file and I was wondering if it was because it was generated from a newer …


Sample does not have a positive sample median when running

https://gatk.broadinstitute.org/hc/en-us/community/posts/360073249712-Sample-does-not-have-a-positive-sample-median-when-running-DenoiseReadCounts-

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping.Its powerful processing engine …


error writing empty character string in rhdf5 >= 2.8.0 - Bioconductor

https://support.bioconductor.org/p/60065/

It was a bug due to the automatic determination of chunk size introduced in rhdf5 2.8.0. I fixed the bug. It is again possible to write 0-length objects with h5write using rhdf 2.9.2 (available after …


hdf5 errors in unit tests · GitHub

https://gist.github.com/mbmcgarry/c572b0e6b4c0e3617af7

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Chapter 9: HDF5 Error Handling - Lawrence Berkeley National …

http://davis.lbl.gov/Manuals/HDF5-1.8.7/UG/13_ErrorHandling.html

9.1. Introduction. The HDF5 Library provides an error reporting mechanism for both the library itself and for user application programs. It can trace errors through ...


IllustrisTNG - cannot read dataset

https://www.tng-project.org/data/forum/topic/430/cannot-read-dataset/

There are no groups or subhalos in that file, as indicated by the header fields, so you shouldn't try to read such a dataset. (If you re-implement the read routines in C++ you will …


A number of small problems - HDFView / Java HDF Object …

https://forum.hdfgroup.org/t/a-number-of-small-problems/4150

1) "long double" / f16 float types are not viewable with HDFView 3.0. The data type is shown as "Unknown" with all values displayed as "*unknown*". It would be nice if it could …


XDMF write_checkpoint leads to segfault in paraview

https://bitbucket.org/fenics-project/dolfin/issues/1039/xdmf-write_checkpoint-leads-to-segfault-in

To reproduce, ``` #!python import dolfin from dolfin import * mesh = UnitSquareMesh(10,10) DG1 = FunctionSpace(mesh,'DG', 1) class Step(UserExpression): def __init__ ...


hdf5 file read problem. - MATLAB Answers - MATLAB Central

https://uk.mathworks.com/matlabcentral/answers/244907-hdf5-file-read-problem

A sample file has been attached. I had to change the extension to png so I can upload it. After download you can change it back to hdf5 but it doesn't really matter for Matlab.


hdf5 error for Anthony · GitHub

https://gist.github.com/mbmcgarry/1bcad0e34974bbad8b09

Instantly share code, notes, and snippets. mbmcgarry / error_for_anthony. Created Jan 9, 2015


[Solved]-hdf5 example code h5_rdwt.c does not work-eclipse

https://www.appsloveworld.com/eclipse/100/115/hdf5-example-code-h5-rdwt-c-does-not-work

Coding example for the question hdf5 example code h5_rdwt.c does not work-eclipse. ... #000: ../../src/H5D.c line 334 in H5Dopen2(): not found major: Dataset minor: Object not found High …


unit/regression test failures on osx 10.9.3 with hdf5 1.8.13

https://groups.google.com/g/cyclus-dev/c/7zZHaY7BaxE/m/ioxnB8f7b-YJ

unit/regression test failures on osx 10.9.3 with hdf5 1.8.13 ... Groups


cymetricError.test · GitHub

https://gist.github.com/FlanFlanagan/111146f7cae01d1a49af5bf9cc22498d

GitHub Gist: instantly share code, notes, and snippets.


Hasselblad H5D 50C Review - Digital Photo Pro

https://www.digitalphotopro.com/reviews/hands-on-review-hasselblad-h5d-50c/

As with most medium-format digital system, the H5D-50 is comprised of a body and removable digital back. The two work in tandem, and it’s largely the 50C back we’re …


HDF5/H5D API Specification - Hierarchical Data Format

https://docs.hdfgroup.org/archive/support/HDF5/doc/RM/RM_H5D.html

Name: H5Dcreate2 Signature: hid_t H5Dcreate2( hid_t loc_id, const char *name, hid_t dtype_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id). Purpose: Creates a new …


parcollet’s gists · GitHub

https://gist.github.com/parcollet/

Instantly share code, notes, and snippets. Olivier Parcollet parcollet 27 followers · 0 following


Python 在caffe中为训练模型使用HDF5数据时出 …

https://duoduokou.com/python/40841180682947904544.html

Python 在caffe中为训练模型使用HDF5数据时出错 python deep-learning 但是我得到了以下错误 I0219 19:06:43.038563 5773 caffe.cpp:103] Use CPU.


Camera Review: Hasselblad H5D-50 - PDN Online

https://pdnonline.com/gear/cameras/camera-review-hasselblad-h5d-50/

Features. The most important feature on the Hasselblad H5D-50 is not really a feature at all: It’s the heart of this system. Namely, it’s the H5D-50’s 50-megapixel (6,132 x …


Thread: Re: [Xolotl-psi-development] Xolotl Installation

https://sourceforge.net/p/xolotl-psi/mailman/xolotl-psi-development/thread/543BBE16.1020501%40ornl.gov/

Hi Agraj, You can open a ticket on https://sourceforge.net/p/xolotl-psi/tickets/.With the screenshot you sent it is hard for me to read what the error is. Also, it ...


Re: [Xolotl-psi-development] Xolotl Installation | Xolotl Plasma ...

https://sourceforge.net/p/xolotl-psi/mailman/message/32925891/

If you are not interested in the performance monitoring, you can edit the generated params.txt file to set "perfHandler=dummy". Here is another wiki page that might be useful in the future about …


Error basement 3.0: out of range - forum.basement.ethz.ch

https://forum.basement.ethz.ch/viewtopic.php?id=5194

Please not that the the last node ID must be indicated by setting the minus sign (-) in front of it. ND 1231 35.625000 10.000000 2.821875 ND 1232 38.870658 -2.536187 …


installation using macports on Mac OS X? - Google Groups

https://groups.google.com/g/salvus/c/pQaB8m-yzB8

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mbmcgarry@dyn-72-33-204-90 ~/git/cyclus/build/bin (mpisd)

https://pastebin.com/HDb9G5tA

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